Data
Open data from the lab
Sequence data are deposited at NCBI and EBI/ENA; software releases, reference databases and preprints are archived with DOIs on Zenodo.
Zenodo
Zenodo community
zenodo.org/communities/cryomics →
Preprints, software releases and reference databases from the lab, archived with DOIs in the Cryomics Lab community on Zenodo.
Sequence data
GenBank accessions
Public sequence data from the lab's studies, archived at NCBI and EBI/ENA. The BioProjects below are the top-level landing pages — each gathers all of a study's samples and raw reads; individual genomes and marker-gene libraries follow.
Sequencing projects
- NCBIMetabarcoding surveys of the Arctic marine environmentPRJNA4212932,007 samples · 4,273 runs
- NCBIArctic MetagenomesPRJNA681031305 samples · 305 runs
- ENAArctic Ocean metagenomes from HLY1502 (2015 GEOTRACES Healy cruise)PRJEB14154204 runs
- NCBICold Climate Oil Biodegradation ExperimentsPRJNA1176269139 samples · 139 runs
- NCBICryosphere Bacterial GenomesPRJNA42092394 samples · 97 runs
- NCBIBacteria cultured from Chesapeake BayPRJNA64843253 samples · 53 runs
- NCBIMetabarcoding of Seawater from Machias Seal IslandPRJNA117097631 samples · 44 runs
- NCBISulfolane-degrading Rhodoferax — metagenome-assembled genome (stable isotope probing)PRJNA43472131 runs
- NCBISea-ice and seawater fungi — 18S/28S rRNA surveys of the western ArcticPRJNA31543816 runs
- NCBIMetabarcoding Surveys of Freshwater EcosystemsPRJNA141695316 samples · 16 runs
- NCBIMicrobial eukaryotes in Arctic sea ice — 18S seasonality surveyPRJNA28667612 runs
- ENASea-ice bacteria RNA-seq — temperature stress in Polaribacter and ShewanellaPRJEB197918 runs
- NCBIBering Sea eukaryotic microbes — 18S rRNA across ice-covered watersPRJNA305766
Genomes & marker-gene libraries
Persistence of bacterial and archaeal communities in sea ice through an Arctic winter
- Bacterial 16S rRNA genesEU836892–EU837057, FJ753995–FJ754002174 sequences
- Archaeal 16S rRNA genesEU486859–EU48695597 sequences
- Eukaryotic 18S rRNA genesFJ753982–FJ75399413 sequences
Genome of Sphaeroforma sirkka strain B5 (Oxford Nanopore MinION + Illumina HiSeq)
- Whole-genome assemblyGCA_001586965BioSample